Biophysical Journal

Defining domain-specific orientational order in the desmosomal cadherins.  121:4325-4341. 2022

DNA-RNA hybrid G-quadruplex tends to form near the 3′ end of telomere overhang.  121:2962-2980. 2022

DeepTracer-ID: De novo protein identification from cryo-EM maps.  121:2840-2848. 2022

Control of subunit stoichiometry in single-chain MspA nanopores.  121:742-754. 2022

Transient-state kinetic analysis of multi-nucleotide addition catalyzed by RNA polymerase I.  120:4378-4390. 2021

The N-terminal domain of the A12.2 subunit stimulates RNA polymerase I transcription elongation.  120:1883-1893. 2021

Stable polymer bilayers for protein channel recordings at high guanidinium chloride concentrations.  120:1537-1541. 2021

Kinetic Analysis of AAA+ Translocases by Combined Fluorescence and Anisotropy Methods.  119:1335-1350. 2020

Precisely Control Mitochondria with Light to Manipulate Cell Fate Decision.  117:631-645. 2019

Hsp104 and Potentiated Variants Can Operate as Distinct Nonprocessive Translocases.  116:1856-1872. 2019

Supramolecular Organization of Apolipoprotein-A-I-Derived Peptides within Disc-like Arrangements.  115:467-477. 2018

The A12.2 Subunit Is an Intrinsic Destabilizer of the RNA Polymerase I Elongation Complex.  114:2507-2515. 2018

Desmoglein 3 Order and Dynamics in Desmosomes Determined by Fluorescence Polarization Microscopy.  113:2519-2529. 2017

Membrane Mechanics of Primary Afferent Neurons in the Dorsal Root Ganglia of Rats.  112:1654-1662. 2017

Particle-Tracking Microrheology Using Micro-Optical Coherence Tomography.  111:1053-1063. 2016

Optical Mapping of Membrane Potential and Epicardial Deformation in Beating Hearts.  111:438-451. 2016

Emergence of Collagen Orientation Heterogeneity in Healing Infarcts and an Agent-Based Model.  110:2266-2277. 2016

Intracellular Impedance Measurements Reveal Non-ohmic Properties of the Extracellular Medium around Neurons.  110:234-246. 2016

Transient-State Kinetic Analysis of the RNA Polymerase i Nucleotide Incorporation Mechanism.  109:2382-2393. 2015

A Single Molecule Perspective of Elongation by RNA Polymerase I.  108:508a. 2015

Influence of Zinc-Binding on Folding and Dynamics of Zinc Finger Proteins: In Silico.  108:519a. 2015

Polarization-controlled TIRFM with focal drift and spatial field intensity correction.  106:1008-1019. 2014

Mechanical boundary conditions bias fibroblast invasion in a collagen-fibrin wound model.  106:932-943. 2014

Delays induce novel stochastic effects in negative feedback gene circuits.  106:467-478. 2014

Single Molecule Investigation of RNA Polymerase I using Multiplexed Tethered Particle Motion.  106:489a. 2014

Conserved spatial organization of FG domains in the nuclear pore complex.  104:37-50. 2013

Single Molecule Characterization of RNA Polymerase I: Force Free Kinetic Measurements.  104:585a. 2013

Number and brightness analysis of LRRK2 oligomerization in live cells.  102. 2012

Biological Nanopore MspA for DNA Sequencing.  102:203a. 2012

Single-molecule measurements of dissociation rates and energy landscapes of binary trans snare complexes in parallel versus antiparallel orientation.  101:1854-1862. 2011

An Examination of the Kinetic Mechanism of the ATP-Dependent Protease ClpAP.  100:392-392. 2011

Sensing and modulation of invadopodia across a wide range of rigidities.  100:573-582. 2011

Structural and Functional Studies of the E. Coli ClpA Molecular Motor.  100:390-391. 2011

Contributions of Ordered Solvent to Long-Range DNA-Dendrimer Interactions.  100:356a-357a. 2011

Determining the Resolution of Biological Porin Mspa for Nanopore Sequencing.  100:167a-168a. 2011

Structure and Interactions of the M. tuberculosis Membrane Protein Virulence Factor Rv0899.  100:8a. 2011

Role of altered sialylation of the i-like domain of β1 integrin in the binding of fibronectin to β1 integrin: Thermodynamics and conformational analyses.  99:208-217. 2010

Counter-intuitive stochastic behavior of simple gene circuits with negative feedback.  98:1742-1750. 2010

Microscopic basis for the mesoscopic extensibility of dendrimer-compacted DNA.  98:834-842. 2010

A Novel DNA Sensing Technique using the Nanopore MspA.  98:422a. 2010

Fluorescence anisotropy reveals order and disorder of protein domains in the nuclear pore complex.  99:1706-1717. 2010

Model of the Drosophila Circadian Clock: Loop Regulation and Transcriptional Integration.  98:738a-739a. 2010

Single Nucleotide Discrimination in Single Stranded DNA Immobilized within Biological Nanopore MspA.  98:600a. 2010

Structure of the Mycobacterium Tuberculosis Virulence Factor Rv0899 (ompATb).  98:624a-625a. 2010

Mathematical model of the Drosophila circadian clock: Loop regulation and transcriptional integration.  97:2399-2408. 2009

Spatial and temporal dynamics of mitochondrial membrane permeability waves during apoptosis.  97:2222-2231. 2009

Molecular Dynamics Simulations Of Alpha Synuclein In The Presence Of Sds Micelles.  96:454a-455a. 2009

Nanopore Sequencing with MspA.  96:316a. 2009

Stoichiometries and Energetics of Cationic Nanoparticle-Membrane Complexes.  96:19a. 2009

TβRIII Restores Normal Cytoskeleton Mechanics In Ovarian Cancer Cells.  96:521a. 2009

Thermal stability of apolipoprotein A-I in high-density lipoproteins by molecular dynamics.  96:354-371. 2009

Conformation and free energy analyses of the complex of calcium-bound calmodulin and the Fas death domain.  95:5913-5921. 2008

Comparative energy measurements in single molecule interactions.  95:419-425. 2008

Molecular dynamics simulations of asymmetric NaCI and KCl solutions separated by phosphatidylcholine bilayers: Potential drops and structural changes induced by strong Na⁺-lipid interactions and finite size effects.  94:3565-3576. 2008

Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations (Biophysical Journal (2008) 94,6 (2306-2319)).  94:3361. 2008

Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations.  94:2306-2319. 2008

Panoramic optical mapping reveals continuous epicardial reentry during ventricular fibrillation in the isolated swine heart.  92:1090-1095. 2007

Three-color alternating-laser excitation of single molecules: Monitoring multiple interactions and distances.  92:303-312. 2007

Assisting the reactivation of guanidine hydrochloride-denatured aminoacylase by hydroxypropyl cyclodextrins..  91:686-693. 2006

Oligomerization and aggregation of bovine pancreatic ribonuclease A: characteristic events observed by FTIR spectroscopy..  90:2525-2533. 2006

Novel changes in discoidal high density lipoprotein morphology: A molecular dynamics study.  90:4345-4360. 2006

Prediction of volatile anesthetic binding sites in proteins.  91:3405-3414. 2006

Single molecule mechanical probing of the SNARE protein interactions.  91:744-758. 2006

Conformational change in the C-terminal domain is responsible for the initiation of creatine kinase thermal aggregation..  89:2650-2658. 2005

Assembly of lipoprotein particles containing apolipoprotein-B: Structural model for the nascent lipoprotein particle.  88:2789-2800. 2005

Interactions of nucleotide cofactors with the Escherichia coli replicative helicase PriA.  88:64A-64A. 2005

Membrane thinning due to antimicrobial peptide binding: An atomic force microscopy study of MSI-78 in lipid bilayers.  89:4043-4050. 2005

Ca²⁺ Modulation of Ca²⁺ Release-Activated Ca ²⁺ Channels Is Responsible for the Inactivation of Its Monovalent Cation Current.  86:805-814. 2004

Continuum diffusion reaction rate calculations of wild-type and mutant mouse acetylcholinesterase: Adaptive finite element analysis.  87:1558-1566. 2004

Finite Element Solution of the Steady-State Smoluchowski Equation for Rate Constant Calculations.  86:2017-2029. 2004

Influence of the amino substituents in the interaction of ethidium bromide with DNA.  87:3974-3981. 2004

Polarized fluorescence resonance energy transfer microscopy..  87:2787-2797. 2004

Simulation of the diffusion and reaction of nitric oxide produced within erythrocytes.  86:249A-249A. 2004

Spectroscopy and fluorescence quenching of hydrophobic sunscreen agentsadsorbed to nanospheres.  86:608A-608A. 2004

Deacylated pulmonary surfactant protein SP-C transforms from α-helical to amyloid fibril structure via a pH-dependent mechanism: An infrared structural investigation.  85:2417-2429. 2003

General methods for analysis of sequential "n-step" kinetic mechanisms: Application to single turnover kinetics of helicase-catalyzed DNA unwinding.  85:2224-2239. 2003

Kinetic mechanism for E. coli RecBCD-catalyzed DNA unwinding studied by fluorescence stopped-flow methods.  84:364A-364A. 2003

Effect of hydrophobic surfactant proteins SP-B and SP-C on binary phospholipid monolayers II. Infrared external reflectance-absorption spectroscopy.  84:326-340. 2003

Effect of hydrophobic surfactant proteins SP-B and SP-C on phospholipid monolayers. Protein structure studied using 2D IR and βv correlation analysis.  83:2126-2141. 2002

A tight-coupling cooperative model reproduces observed steady-state and dynamic muscle activation data.  82:393A-393A. 2002

Injury current induces spontaneous activity in rabbit Purkinje myocytes..  82:98A-98A. 2002

Inhibiting transient outward current enhances discontinuous conduction in rabbit ventricular cell pairs.  80:641A-641A. 2001

Osmotically induced membrane tension modulates membrane permeabilization by class L amphipathic helical peptides: Nucleation model of defect formation.  81:949-959. 2001

Spectral shifts and energy transfer in 2-aminopurine-containing oligonucleotides: All-adenine tracts and an ECO RI recognition sequence.  80:8A-8A. 2001

DNA unwinding step-size of E-coli recBCD helicase..  78:302A-302A. 2000

Molecular belt models for the apolipoprotein A-I Paris and milano mutations.  79:1679-1685. 2000

Sequence dependence of energy transfer in DNA oligonucleotides.  78:1042-1058. 2000

Temperature and base sequence dependence of 2-aminopurine fluorescence bands in single-stranded DNA.  78:308A-308A. 2000

Effect of hydrophobic surfactant peptides SP-B and SP-C on binary phospholipid monolayers. I. Fluorescence and dark-field microscopy.  77:903-914. 1999

Mechanism of scaffolding-directed virus assembly suggested by comparison of scaffolding-containing and scaffolding-lacking P22 procapsids.  76:3267-3277. 1999

Solution x-ray scattering-based estimation of electron cryomicroscopy imaging parameters for reconstruction of virus particles.  76:2249-2261. 1999

Conduction between isolated Purkinje and ventricular myocytes.  74:A160-A160. 1998

Conformations of DNA bases: 2-aminopurine fluorescence decays and NMR.  74:A21-A21. 1998

Cystic fibrosis transmembrane conductance regulator (CFTR) anion binding as a probe of the pore.  74:1320-1332. 1998

Local rules simulation of the kinetics of virus capsid self-assembly.  75:2626-2636. 1998

Partial cellular uncoupling reverses unidirectional conduction block across abrupt expansions of cardiac tissue..  72:WAMD6-WAMD6. 1997

Raman, infrared, and time-resolved fluorescence spectroscopic studies of 2-aminopurine and oligonucleotides..  72:THAM2-THAM2. 1997

Point mutations in αbENaC regulate channel gating, ion selectivity, and sensitivity to amiloride.  72:1622-1632. 1997

Spectroscopy & microscopy of aqueous lipid monolayers with applications to pulmonary surfactant: IR and fluorescence studies..  72:MP271-MP271. 1997

Atomic force microscopy study of the secretory granule lumen.  71:2356-2366. 1996

Steady-state [Ca2+]i-force relationship in intact twitching cardiac muscle: direct evidence for modulation by isoproterenol and EMD 53998.  69:189-201. 1995

DNA MELTING, PREMELTING AND DYNAMICS MEASURED BY OPTICAL SPECTROSCOPY OF NORMAL AND FLUORESCENT BASES.  66:A231-A231. 1994

Ca-mediated and independent effects of arachidonic acid on gap junctions and Ca-independent effects of oleic acid and halothane.  67:1052-1059. 1994

Inactivation of L-type Ca channels in embryonic chick ventricle cells: dependence on the cytoskeletal agents colchicine and taxol.  67:2296-2304. 1994

Pressure denaturation of the bacteriophage P22 coat protein and its entropic stabilization in icosahedral shells.  66:1631-1641. 1994

Virtual electrode effects in myocardial fibers.  66:719-728. 1994

A mathematically defined motif for the radial distribution of charged residues on apolipoprotein amphipathic alpha helixes.  64:1827-1832. 1993

COMBINED IR SPECTROSCOPY AND SCANNING PROBE MICROSCOPY OF LANGMUIR-BLODGETT AND SELF-ASSEMBLED BIOMEMBRANE MONOLAYERS.  64:A294-A294. 1993

Gap junction gating sensitivity to physiological internal calcium regardless of pH in Novikoff hepatoma cells.  65:2002-2012. 1993

Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells.  64:824-835. 1993

Effect of firing rate on the calcium permeability in adult neurons during spontaneous action potentials.  63:926-934. 1992

BASE STACKING AND UNSTACKING AS DETERMINED FROM A DNA DECAMER CONTAINING A FLUORESCENT BASE.  57:A221-A221. 1990

Muscle stiffness measured under conditions simulating natural sound production.  58:557-565. 1990

Infrared spectroscopic investigations of pulmonary surfactant. Surface film transitions at the air-water interface and bulk phase thermotropism.  56:1173-1181. 1989

Polarization states of diffracted light. Changes accompanying fiber activation.  56:595-605. 1989

The mechanism of low-frequency sound production in muscle.  51:775-783. 1987

Modeling of proton spin relaxation in muscle tissue using nuclear magnetic resonance spin grouping and exchange analysis.  50:181-191. 1986

Step reductions in extracellular Ca2+ activate a transient inward current in chick dorsal root ganglion cells.  50:753-757. 1986

Dynamics of Apolipoprotein-Phospholipid Interactions.  37:172-173. 1982

Raman and Fourier Transform Infrared Spectroscopic Studies of the Interaction between Glycophorin and Dimyristoylphosphatidylcholine.  37:83-84. 1982

Structural Domains in Vesicular Stomatitis Virus Membrane as Studied by Differential Scanning Calorimetry.  37:25-26. 1982

Lifetime of fluorescence from light-harvesting chlorophyll a/b proteins. Excitation intensity dependence.  36:193-201. 1981

Amide hydrogen exchange rates of peptides in H2O solution by 1H nuclear magnetic resonance transfer of solvent saturation method. Conformations of oxytocin and lysine vasopressin in aqueous solution.  26:345. 1979

Interpretation of the absorption and circular dichroic spectra of oriented purple membrane films.  26:427-440. 1979

Fast reactions in carbon monoxide binding to heme proteins.  24:319-334. 1978

Solution conformation of peptides by the intramolecular nuclear Overhauser effect experiment. Study of valinomycin-K+.  24:791-814. 1978