Positions

Selected Publications

Academic Article

Year Title Altmetric
2023 Acute respiratory distress syndrome after SARS-CoV-2 infection on young adult population: International observational federated study based on electronic health records through the 4CE consortiumPLoS One.  18. 2023
2023 Predictive models for abdominal aortic aneurysms using polygenic scores and PheWAS-derived risk factorsPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.  425-436. 2023
2022 Do electronic health record systems "dumb down" clinicians?Journal of the American Medical Informatics Association.  30:172-177. 2022
2022 A Systematic Approach to Configuring MetaMap for Optimal Performance 2022
2022 Development and validation of a trans-ancestry polygenic risk score for type 2 diabetes in diverse populations 2022
2022 International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortalitynpj Digital Medicine.  5. 2022
2022 A research agenda to support the development and implementation of genomics-based clinical informatics tools and resourcesJournal of the American Medical Informatics Association.  29:1342-1349. 2022
2022 Physicians' perceptions about a semantically integrated display for chart review: A Multi-Specialty surveyInternational Journal of Medical Informatics.  163. 2022
2022 The Roles of a Secondary Data Analytics Tool and Experience in Scientific Hypothesis Generation in Clinical Research: Protocol for a Mixed Methods StudyJMIR Research Protocols.  11. 2022
2022 The Roles of a Secondary Data Analytics Tool and Experience in Scientific Hypothesis Generation in Clinical Research: Protocol for a Mixed Methods Study (Preprint) 2022
2022 Synergies between centralized and federated approaches to data quality: A report from the national COVID cohort collaborativeJournal of the American Medical Informatics Association.  29:609-618. 2022
2022 Mapping 2 Decades of Research in Health Services Research, Health Policy, and Health Economics JournalsMedical Care.  60:264-272. 2022
2022 Developing real-world evidence from real-world data: Transforming raw data into analytical datasetsLearning Health Systems.  6. 2022
2022 The biomedical informatics short course at Woods Hole/Georgia: Training to support institutional change.Information Services and Use.  42:47-59. 2022
2021 Evolving phenotypes of non-hospitalized patients that indicate long COVIDBMC Medicine.  19. 2021
2021 Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19Scientific Reports.  11. 2021
2021 Opportunity for Genotype-Guided Prescribing Among Adult Patients in 11 US Health SystemsClinical Pharmacology and Therapeutics.  110:179-188. 2021
2021 Physicians’ perceptions about narrative note sections format and content: A multi-specialty surveyInternational Journal of Medical Informatics.  151. 2021
2021 A state-based approach to genomics for rare disease and population screeningGenetics in Medicine.  23:777-781. 2021
2021 Research informatics and the COVID-19 pandemic: Challenges, innovations, lessons learned, and recommendations.Journal of Clinical and Translational Science.  5:e110. 2021
2021 The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deploymentJournal of the American Medical Informatics Association.  28:427-443. 2021
2021 What every reader should know about studies using electronic health record data but may be afraid to ask 2021
2021 PAGER-CoV: A comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studiesNucleic Acids Research.  49:D589-D599. 2021
2021 Appropriate use of machine learning in healthcareIntelligence-Based Medicine.  5:100041. 2021
2021 Racial Disparity in Clinical Alert OverridesProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2021:314-323. 2021
2021 The Biomedical Informatics Short Course at Woods Hole/Georgia: Training to Support Institutional ChangeAssistive technology research series.  288:51-63. 2021
2020 International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortiumnpj Digital Medicine.  3. 2020
2020 Prescribing Prevalence of Medications With Potential Genotype-Guided Dosing in Pediatric PatientsJAMA Network Open.  3:e2029411. 2020
2020 Formal representation of patients' care context data: The path to improving the electronic health recordJournal of the American Medical Informatics Association.  27:1648-1657. 2020
2020 A review of auditing techniques for the unified medical language systemJournal of the American Medical Informatics Association.  27:1625-1638. 2020
2020 What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask (Preprint) 2020
2020 Recruiting diversity where it exists: The Alabama Genomic Health InitiativeJournal of Genetic Counseling.  29:471-478. 2020
2020 Twilighted Homegrown Systems: The Experience of Six Traditional Electronic Health Record Developers in the Post-Meaningful Use EraApplied Clinical Informatics.  11:356-365. 2020
2020 Health information technology as a learning health system: Call for a national monitoring systemLearning Health Systems.  4. 2020
2020 Using clinical reasoning ontologies to make smarter clinical decision support systems: A systematic review and data synthesisJournal of the American Medical Informatics Association.  27:159-174. 2020
2019 The 2018 fellow cohort of the American College of Medical InformaticsJournal of the American Medical Informatics Association.  26:1150-1155. 2019
2019 The 2018 fellow cohort of the American College of Medical Informatics.Journal of the American Medical Informatics Association.  26:1150-1155. 2019
2019 Putting the "why" in "eHR": Capturing and coding clinical cognitionJournal of the American Medical Informatics Association.  26:1379-1384. 2019
2019 Structured override reasons for drug-drug interaction alerts in electronic health recordsJournal of the American Medical Informatics Association.  26:934-942. 2019
2019 Unintended consequences of nationwide electronic health record adoption: Challenges and opportunities in the post-meaningful use era 2019
2019 A visual interactive analytic tool for filtering and summarizing large health data sets coded with hierarchical terminologies (VIADS)BMC Medical Informatics and Decision Making.  19. 2019
2019 Clinicians' reasoning as reflected in electronic clinical note-entry and reading/retrieval: a systematic review and qualitative synthesisJournal of the American Medical Informatics Association.  26:172-184. 2019
2019 Unintended Consequences of Nationwide Electronic Health Record Adoption: Challenges and Opportunities in the Post-Meaningful Use Era (Preprint) 2019
2019 A Potential Answer to the Alert Override Riddle: Using Patient Attributes to Predict False Positive AlertsProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2019:532-541. 2019
2018 Sustainability considerations for clinical and translational research informatics infrastructure.Journal of Clinical and Translational Science.  2:267-275. 2018
2018 An Exploration of the Terminology of Clinical Cognition and ReasoningProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2018:321-329. 2018
2018 Is Multiclass Automatic Text De-Identification Worth the Effort? 2018
2018 Phenotype Detection Registry System (PheDRS) - Implementation of a Generalizable Single Institution Clinical Registry ArchitectureProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2018:847-856. 2018
2017 The UAB Informatics Institute and 2016 CEGS N-GRID de-identification shared task challengeJournal of Biomedical Informatics.  75:S54-S61. 2017
2017 A survey of practices for the use of electronic health records to support research recruitment.Journal of Clinical and Translational Science.  1:246-252. 2017
2017 A learning health care system using computer-aided diagnosis 2017
2017 Computer-aided assessment of the generalizability of clinical trial resultsInternational Journal of Medical Informatics.  99:60-66. 2017
2017 Context-sensitive decision support (infobuttons) in electronic health records: A systematic reviewJournal of the American Medical Informatics Association.  24:460-468. 2017
2017 Improving precision medicine using individual patient data from trialsCMAJ.  189:E204-E207. 2017
2017 Classifying Clinical Trial Eligibility Criteria to Facilitate Phased Cohort Identification Using Clinical Data RepositoriesProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2017:1754-1763. 2017
2017 Clinical informatics researcher’s desiderata for the data content of the next generation electronic health recordApplied Clinical Informatics.  8:1159-1172. 2017
2016 User-centered design of multi-gene sequencing panel reports for cliniciansJournal of Biomedical Informatics.  63:1-10. 2016
2016 A multi-site cognitive task analysis for biomedical query mediationInternational Journal of Medical Informatics.  93:74-84. 2016
2016 Impending Challenges for the Use of Big Data 2016
2016 Visual assessment of the similarity between a patient and trial population: Is this clinical trial applicable to my patient?Applied Clinical Informatics.  7:477-488. 2016
2016 Facilitating biomedical researchers' interrogation of electronic health record data: Ideas from outside of biomedical informaticsJournal of Biomedical Informatics.  60:376-384. 2016
2016 DREAM: Classification scheme for dialog acts in clinical research query mediationJournal of Biomedical Informatics.  59:89-101. 2016
2016 i3b3: Infobuttons for i2b2 as a Mechanism for Investigating the Information Needs of Clinical ResearchersProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2016:696-704. 2016
2015 Usability and acceptance of the librarian infobutton tailoring environment: An open access online knowledge capture, management, and configuration tool for openinfobutton 2015
2015 Standardizing data exchange for clinical research protocols and case report forms: An assessment of the suitability of the Clinical Data Interchange Standards Consortium (CDISC) Operational Data Model (ODM)Journal of Biomedical Informatics.  57:88-99. 2015
2015 Clinicians' evaluation of computer-assisted medication summarization of electronic medical recordsComputers in Biology and Medicine.  59:221-231. 2015
2015 Clinical documentation in the 21st century: Executive summary of a policy position paper from the American College of PhysiciansACP journal club.  162:301-303. 2015
2015 Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology DevelopmentProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2015:441-447. 2015
2015 Identifying the Clinical Laboratory Tests from Unspecified "Other Lab Test" Data for Secondary UseProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2015:1018-1023. 2015
2015 Point-of-care knowledge-based resource needs of clinicians: A survey from a large academic medical centerApplied Clinical Informatics.  6:305-317. 2015
2015 Reproducing a Prospective Clinical Study as a Computational Retrospective Study in MIMIC-IIProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2015:804-813. 2015
2015 eHealth 2015 Special Issue: Impact of Electronic Health Records on the Completeness of Clinical Documentation Generated during Diabetic Retinopathy Consultations.Applied Clinical Informatics.  6:478-487. 2015
2014 Reply to "tn4401 Carrying blaKPC is inserted within another insertion in pKpQIL and related plasmids"Journal of Clinical Microbiology.  52:4450. 2014
2014 The National Institutes of Health's Biomedical Translational Research Information System (BTRIS): Design, contents, functionality and experience to dateJournal of Biomedical Informatics.  52:11-27. 2014
2014 Developing genomic knowledge bases and databases to support clinical management: current perspectivesPharmacogenomics and Personalized Medicine.  7:275-283. 2014
2014 Health data use, stewardship, and governance: Ongoing gaps and challenges: A report from AMIA's 2012 health policy meetingJournal of the American Medical Informatics Association.  21:204-211. 2014
2014 A complementary graphical method for reducing and analyzing large data sets: Case studies demonstrating thresholds setting and selection 2014
2014 A rapid matrix-assisted laser desorption ionization-time of flight mass spectrometry-based method for single-plasmid tracking in an outbreak of carbapenem-resistant EnterobacteriaceaeJournal of Clinical Microbiology.  52:2804-2812. 2014
2014 Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology RepositoryProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2014:405-413. 2014
2014 Consumer-mediated health information exchanges: The 2012 ACMI debateJournal of Biomedical Informatics.  48:5-15. 2014
2014 Designing a clinical dashboard to fill information gaps in the emergency departmentProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2014:1098-1104. 2014
2014 Don't take your EHR to heaven, donate it to science: Legal and research policies for EHR post mortemJournal of the American Medical Informatics Association.  21:8-12. 2014
2014 Enhancing electronic health records to support clinical research.AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science.  2014:102-108. 2014
2014 Locating relevant patient information in electronic health record data using representations of clinical concepts and database structuresProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2014:969-975. 2014
2014 Piloting a deceased subject integrated data repository and protecting privacy of relativesProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2014:719-728. 2014
2014 Toward a cognitive task analysis for biomedical query mediation.AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science.  2014:218-222. 2014
2013 Evaluating adherence to the international committee of medical journal editors' policy of mandatory, timely clinical trial registrationJournal of the American Medical Informatics Association.  20. 2013
2013 Caveats for the use of operational electronic health record data in comparative effectiveness researchMedical Care.  51. 2013
2013 Linking ClinicalTrials.gov and PubMed to Track Results of Interventional Human Clinical TrialsPLoS One.  8. 2013
2013 Improving the electronic health record - Are clinicians getting what they wished for?Journal of the American Medical Association.  309:991-992. 2013
2013 Terminology challenges implementing the HL7 context-aware knowledge retrieval ('infobutton') standardJournal of the American Medical Informatics Association.  20:218-223. 2013
2013 A comparison of clinicians' access to online knowledge resources using two types of information retrieval applications in an academic hospital settingJournal of the Medical Library Association.  101:26-31. 2013
2013 Characterization of the biomedical query mediation process.AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science.  2013:89-93. 2013
2013 Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2013:648-656. 2013
2013 Practical choices for infobutton customization: experience from four sites.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2013:236-245. 2013
2013 Providing pharmacogenomics clinical decision support using whole genome sequencing data as input.AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science.  2013:81. 2013
2013 Recommendations for the use of operational electronic health record data in comparative effectiveness research.Healthcare: The Journal of Delivery Science and Innovation.  1:1018. 2013
2012 A study of terminology auditors' performance for UMLS semantic type assignmentsJournal of Biomedical Informatics.  45:1042-1048. 2012
2012 The false security of blind dates: Chrononymization's lack of impact on data privacy of laboratory dataApplied Clinical Informatics.  3:392-403. 2012
2012 Development of a prototype continuity of care record with context-specific links to meet the information needs of case managers for persons living with HIVInternational Journal of Medical Informatics.  81:549-555. 2012
2012 Implementations of the HL7 Context-Aware Knowledge Retrieval (" Infobutton" ) Standard: Challenges, strengths, limitations, and uptakeJournal of Biomedical Informatics.  45:726-735. 2012
2012 Development and evaluation of an ontology for guiding appropriate antibiotic prescribingJournal of Biomedical Informatics.  45:120-128. 2012
2012 Incorporating personalized gene sequence variants, molecular genetics knowledge, and health knowledge into an EHR prototype based on the Continuity of Care Record standardJournal of Biomedical Informatics.  45:82-92. 2012
2012 Meeting the electronic health record "meaningful use" criterion for the HL7 infobutton standard using OpenInfobutton and the Librarian Infobutton Tailoring Environment (LITE).Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2012:112-120. 2012
2012 Precision and negative predictive value of links between ClinicalTrials.gov and PubMed.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2012:400-408. 2012
2011 Information needs of case managers caring for persons living with HIVJournal of the American Medical Informatics Association.  18:305-308. 2011
2011 A comparison of two methods for retrieving ICD-9-CM data: The effect of using an ontology-based method for handling terminology changesJournal of Biomedical Informatics.  44:289-298. 2011
2011 AskHERMES: An online question answering system for complex clinical questionsJournal of Biomedical Informatics.  44:277-288. 2011
2011 An investigation into the feasibility of spoken clinical question answering.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2011:954-959. 2011
2011 Graphical methods for reducing, visualizing and analyzing large data sets using hierarchical terminologies.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2011:635-643. 2011
2011 High-quality, standard, controlled healthcare terminologies come of age 2011
2011 Improving adherence to research protocol drug exclusions using a clinical alerting system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2011:257-266. 2011
2010 Automatically extracting information needs from complex clinical questionsJournal of Biomedical Informatics.  43:962-971. 2010
2010 A network-theoretic approach for decompositional translation across Open Biological OntologiesJournal of Biomedical Informatics.  43:608-612. 2010
2010 The use of therapeutic listening with preschoolers with developmental disabilities: A look at the outcomes 2010
2010 A large-scale knowledge management method based on the analysis of the use of online knowledge resourcesProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2010:142-146. 2010
2010 Interpreting nurses' responses to clinical documentation alertsProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2010:116-120. 2010
2010 Multi-National, Multi-Institutional Analysis of Clinical Decision Support Data Needs to Inform Development of the HL7 Virtual Medical Record StandardProceedings / AMIA ... Annual Symposium. AMIA Symposium.  2010:377-381. 2010
2009 Understanding workflow in telehealth video visits: Observations from the IDEATel projectJournal of Biomedical Informatics.  42:581-592. 2009
2009 A Randomized Trial Comparing Telemedicine Case Management with Usual Care in Older, Ethnically Diverse, Medically Underserved Patients with Diabetes Mellitus: 5 Year Results of the IDEATel StudyJournal of the American Medical Informatics Association.  16:446-456. 2009
2009 A review of auditing methods applied to the content of controlled biomedical terminologiesJournal of Biomedical Informatics.  42:413-425. 2009
2009 Practical experience with the maintenance and auditing of a large medical ontologyJournal of Biomedical Informatics.  42:494-503. 2009
2009 The caBIG terminology review processJournal of Biomedical Informatics.  42:571-580. 2009
2009 Using Semantic and Structural Properties of the Unified Medical Language System to Discover Potential Terminological RelationshipsJournal of the American Medical Informatics Association.  16:346-353. 2009
2009 The effects of redesigning the IDEATel architecture on glucose uploadsTelemedicine and e-Health.  15:248-254. 2009
2009 Lay public's knowledge and decisions in response to symptoms of acute myocardial infarctionAdvances in Health Sciences Education.  14:43-59. 2009
2009 Information Needs, Infobutton Manager Use, and Satisfaction by Clinician Type: A Case StudyJournal of the American Medical Informatics Association.  16:140-142. 2009
2009 The contribution of observational studies and clinical context information for guiding the integration of infobuttons into clinical information systems.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2009:109-113. 2009
2009 Use of clinical alerting to improve the collection of clinical research data.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2009:218-222. 2009
2008 Effectiveness of Topic-specific Infobuttons: A Randomized Controlled TrialJournal of the American Medical Informatics Association.  15:752-759. 2008
2008 A conversation between Belding Scribner & Jack Cimino.Hemodialysis International.  12 Suppl 1:S68-S76. 2008
2008 Integrating evidence into clinical information systems for nursing decision supportInternational Journal of Medical Informatics.  77:413-420. 2008
2008 Extracting structured medication event information from discharge summaries.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  237-241. 2008
2008 Identifying logical clinical context clusters in nursing orders for the purpose of information retrieval.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  131-135. 2008
2008 Infobuttons: anticipatory passive decision support.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  1203-1204. 2008
2008 Leading a horse to water: using automated reminders to increase use of online decision support.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  116-120. 2008
2008 Using semantic and structural properties of the UMLS to discover potential terminological relationships.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  555. 2008
2007 Development, implementation, and a cognitive evaluation of a definitional question answering system for physiciansJournal of Biomedical Informatics.  40:236-251. 2007
2007 Analysis of a Study of the Users, Uses, and Future Agenda of the UMLSJournal of the American Medical Informatics Association.  14:221-231. 2007
2007 Collect once, use many: Enabling the reuse of clinical data through controlled terminologiesJournal of AHIMA / American Health Information Management Association.  78:24-31. 2007
2007 A comparison of two methods for retrieving ICD-9-CM data: The effect of using an ontology-based method for handling terminology changes.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  841-845. 2007
2007 A methodology for meeting context-specific information needs related to nursing orders.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  155-159. 2007
2007 A scale-free network view of the UMLS to learn terminology translations.Studies in Health Technology and Informatics.  12:689-693. 2007
2007 An integrated approach to computer-based decision support at the point of care.Transactions of the American Clinical and Climatological Association.  118:273-288. 2007
2007 Auditing dynamic links to online information resources.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  448-452. 2007
2007 Decompositional terminology translation using network analysis.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  588-592. 2007
2007 Evaluation of a UMLS Auditing Process of Semantic Type Assignments.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  294-298. 2007
2007 Information needs related to antibiotic prescribing while using CPOE.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  916. 2007
2007 Medication reconciliation using natural language processing and controlled terminologiesStudies in Health Technology and Informatics.  129:679-683. 2007
2007 Multitasking by clinicians in the context of CPOE and CIS useStudies in Health Technology and Informatics.  129:958-962. 2007
2007 Piecewise synonyms for enhanced UMLS source terminology integration.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  339-343. 2007
2007 Redesign of the Columbia University Infobutton Manager.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  135-139. 2007
2007 Semantic query generation from eligibility criteria in clinical trials.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  1070. 2007
2007 Understanding dimensions of complexity in nurse case managers' workflow in a telemedicine program.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  1006. 2007
2006 Terminology model discovery using natural language processing and visualization techniquesJournal of Biomedical Informatics.  39:626-636. 2006
2006 How well do electronic systems represent colorectal cancer surgery concepts? Evaluation of SNOMED-CT, ICD9-CM, and CPT-4 for content coverageJournal of the American College of Surgeons.  203:s69-s70. 2006
2006 Heuristic evaluation of paper-based Web pages: A simplified inspection usability methodologyJournal of Biomedical Informatics.  39:412-423. 2006
2006 In defense of the DesiderataJournal of Biomedical Informatics.  39:299-306. 2006
2006 Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome ConferenceJournal of Biomedical Informatics.  39:249-251. 2006
2006 Representation of Ophthalmology Concepts by Electronic Systems. Intercoder Agreement among Physicians Using Controlled Terminologies 2006
2006 Beyond information retrieval--medical question answering.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  469-473. 2006
2006 Interruptions during the use of a CPOE system for MICU rounds.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  895. 2006
2006 Mining cross-terminology links in the UMLS.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  624-628. 2006
2006 Reliability of SNOMED-CT coding by three physicians using two terminology browsers.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  131-135. 2006
2006 The practical impact of ontologies on biomedical informatics.IMIA Yearbook of Medical Informatics.  124-135. 2006
2006 Towards a reference model for representing nursing information needsStudies in Health Technology and Informatics.  122:490-495. 2006
2006 Use, usability, usefulness, and impact of an infobutton manager.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  151-155. 2006
2005 Relationship structures and semantic type assignments of the UMLS enriched semantic networkJournal of the American Medical Informatics Association.  12:657-666. 2005
2005 Toward semantic interoperability in home health care: Formally representing OASIS items for integration into a concept-oriented terminologyJournal of the American Medical Informatics Association.  12:410-417. 2005
2005 Personal digital educatorsNew England Journal of Medicine.  352:860-862. 2005
2005 Representation of ophthalmology concepts by electronic systems: Adequacy of controlled medical terminologies 2005
2005 Participant perceptions of the influences of the NLM-sponsored woods hole medical informatics courseJournal of the American Medical Informatics Association.  12:256-262. 2005
2005 Using patient data to retrieve health knowledge.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  136-140. 2005
2004 Towards the development of a conceptual distance metric for the UMLSJournal of Biomedical Informatics.  37:77-85. 2004
2004 An Enriched Unified Medical Language System Semantic Network with a Multiple Subsumption HierarchyJournal of the American Medical Informatics Association.  11:195-206. 2004
2004 Development and representation of a fall-injury risk assessment instrument in a clinical information systemStudies in Health Technology and Informatics.  107:721-725. 2004
2004 Development and representation of a fall-injury risk assessment instrument in a clinical information system.Studies in Health Technology and Informatics.  11:721-725. 2004
2004 PalmCIS: A Wireless Handheld Application for Satisfying Clinician Information NeedsJournal of the American Medical Informatics Association.  11:19-28. 2004
2004 Patterns of usage for a Web-based clinical information system.Studies in Health Technology and Informatics.  11:18-22. 2004
2004 Patterns of usage for a web-based clinical information systemStudies in Health Technology and Informatics.  107:18-22. 2004
2004 Practical considerations for exploiting the World Wide Web to create infobuttons.Studies in Health Technology and Informatics.  11:277-281. 2004
2004 Practical considerations for exploiting the world wide web to create infobuttonsStudies in Health Technology and Informatics.  107:277-281. 2004
2004 Promoting patient safety and enabling evidence-based practice through informatics.Medical Care.  42. 2004
2004 Scenario-based Assessment of Physicians' Information NeedsStudies in Health Technology and Informatics.  107:306-310. 2004
2003 Adequacy of evolving national standardized terminologies for interdisciplinary coded concepts in an automated clinical pathwayJournal of Biomedical Informatics.  36:313-325. 2003
2003 Automated discovery of patient-specific clinician information needs using clinical information system log files.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  145-149. 2003
2003 Automated identification of shortcuts to patient data for a wireless handheld clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  809. 2003
2003 Characterizing information needs and cognitive processes during CIS use.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  852. 2003
2003 Clinical information needs in context: an observational study of clinicians while using a clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  190-194. 2003
2003 Consistency across the hierarchies of the UMLS Semantic Network and MetathesaurusJournal of Biomedical Informatics.  36:450-461. 2003
2003 Development of infobuttons in a wireless environment.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  906. 2003
2003 Integrating nursing diagnostic concepts into the Medical Entities Dictionary using the ISO Reference Terminology Model for Nursing DiagnosisJournal of the American Medical Informatics Association.  10:382-388. 2003
2003 Linking molecular imaging terminology to the gene ontology (GO).Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.  613-623. 2003
2003 Sharing infobuttons to resolve clinicians' information needs.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  815. 2003
2003 The classification of clinicians' information needs while using a clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  26-30. 2003
2003 Use of online resources while using a clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  175-179. 2003
2002 Providing concept-oriented views for clinical data using a knowledge-based system: An evaluationJournal of the American Medical Informatics Association.  9:294-305. 2002
2002 Enriching the structure of the UMLS semantic network.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  939-943. 2002
2002 The cognitive demands of an innovative query user interface.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  850-854. 2002
2002 Theoretical, empirical and practical approaches to resolving the unmet information needs of clinical information system users.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  170-174. 2002
2002 Web-based tailoring and its effect on self-efficacy: results from the MI-HEART randomized controlled trial.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  410-414. 2002
2001 Clinical Knowledge and Practice in the Information Age: A Handbook for Health ProfessionalsJournal of Biomedical Informatics.  34:144-145. 2001
2001 'Televaluation' of clinical information systems: An integrative approach to assessing Web-based systemsInternational Journal of Medical Informatics.  61:45-70. 2001
2001 A knowledge-based, concept-oriented view generation system for clinical dataJournal of Biomedical Informatics.  34:112-128. 2001
2001 Accessing heterogeneous sources of evidence to answer clinical questionsJournal of Biomedical Informatics.  34:85-98. 2001
2001 Battling Scylla and Charybdis: the search for redundancy and ambiguity in the 2001 UMLS metathesaurus.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  120-124. 2001
2001 Book reviewsJournal of Biomedical Informatics.  34:143. 2001
2001 Building a knowledge base to support a digital library.Studies in Health Technology and Informatics.  10:221-225. 2001
2001 Developing tailored theory-based educational content for WEB applications: illustrations from the MI-HEART project.Studies in Health Technology and Informatics.  10:1474-1478. 2001
2001 Development of an ontology to model medical errors, information needs, and the clinical communication space.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  672-676. 2001
2001 Integrating existing drug formulation terminologies into an HL7 standard classification using OpenGALEN.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  766-770. 2001
2001 Integration of nursing assessment concepts into the medical entities dictionary using the LOINC semantic structure as a terminology model.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  115-119. 2001
2001 Partitioning an object-oriented terminology schema 2001
2001 Perceived information needs and communication difficulties of inpatient physicians and nurses.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  453-457. 2001
2001 Studying the human-computer-terminology interfaceJournal of the American Medical Informatics Association.  8:163-173. 2001
2001 Terminology tools: State of the art and practical lessons 2001
2001 Using narrative reports to support a digital library.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  458-462. 2001
2001 What do patients do with access to their medical records?Studies in Health Technology and Informatics.  10:1440-1444. 2001
2000 An "infobutton" for enabling patients to interpret on-line Pap smear reports.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  47-50. 2000
2000 An evaluation of patient access to their electronic medical records via the World Wide Web.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  151-155. 2000
2000 Automated knowledge extraction from MEDLINE citations.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  575-579. 2000
2000 Evaluation of Web-based patient information resources: application in the assessment of a patient clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  443-447. 2000
2000 Evaluation of the clinical LOINC (Logical Observation Identifiers, Names, and Codes) semantic structure as a terminology model for standardized assessment measuresJournal of the American Medical Informatics Association.  7:529-538. 2000
2000 Formal combinations of guidelines: a requirement for self-administered personalized health education.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  522-526. 2000
2000 From data to knowledge through concept-oriented terminologies: Experience with the medical entities dictionaryJournal of the American Medical Informatics Association.  7:288-297. 2000
2000 Representing the UMLS as an object-oriented database: Modeling issues and advantagesJournal of the American Medical Informatics Association.  7:66-80. 2000
2000 Toward vocabulary domain specifications for health level 7-coded data elementsJournal of the American Medical Informatics Association.  7:333-342. 2000
1999 Evaluation of a proposed method for representing drug terminology.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  47-51. 1999
1999 Evaluation of a system to identify relevant patient information and its impact on clinical information retrieval.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  642-646. 1999
1999 Evaluation of the Information Sources Map.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  873-877. 1999
1999 Letter to the editor [1] 1999
1999 Modeling patient response to acute myocardial infarction: implications for a tailored technology-based program to reduce patient delay.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  570-574. 1999
1999 Modeling the UMLS using an OODB.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  82-86. 1999
1999 The Columbia medical informatics story: from clinical system to major department.M.D. computing : computers in medical practice.  16:31-34. 1999
1999 Toward a framework for computer-mediated collaborative design in medical informatics 1999
1999 WebCIS: large scale deployment of a Web-based clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  804-808. 1999
1998 Combining laboratory data sets from multiple institutions using the logical observation identifier names and codes (LOINC)International Journal of Medical Informatics.  51:29-37. 1998
1998 A study of collaboration among medical informatics research laboratoriesArtificial Intelligence in Medicine.  12:97-123. 1998
1998 Distributed cognition and knowledge-based controlled medical terminologiesArtificial Intelligence in Medicine.  12:153-168. 1998
1998 A proposal for incorporating health level seven (HL7) vocabulary in the UMLS Metathesaurus.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  800-804. 1998
1998 Architecture for a Web-based clinical information system that keeps the design open and the access closed.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  121-125. 1998
1998 Auditing the Unified Medical Language System with semantic methodsJournal of the American Medical Informatics Association.  5:41-51. 1998
1998 Automated knowledge extraction from the UMLS.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  568-572. 1998
1998 Desiderata for controlled medical vocabularies in the twenty-first century 1998
1998 Reproducibility of interpreting "and" and "or" in terminology systems.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  790-794. 1998
1998 The concepts of language and the language of concepts 1998
1998 Use of alternative therapies by a low price income populationAcupuncture and Electro-Therapeutics Research.  23:135-142. 1998
1997 Beyond the Superhighway: Exploiting the Internet with Medical InformaticsJournal of the American Medical Informatics Association.  4:279-284. 1997
1997 Controlled Vocabulary and Design of Laboratory Results DisplaysJournal of the American Medical Informatics Association.  4:719-723. 1997
1997 Controlled vocabulary and design of laboratory results displays.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  719-723. 1997
1997 Linking a Clinical System to Heterogeneous Information ResourcesJournal of the American Medical Informatics Association.  4:553-557. 1997
1997 Linking a clinical system to heterogeneous information resources.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  553-557. 1997
1997 Medical language and terminologiesStudies in Health Technology and Informatics.  36:197-203. 1997
1997 Partitioning a Vocabulary's IS-A Hierarchy into TreesProceedings / AMIA ... Annual Symposium. AMIA Symposium.  4:630-634. 1997
1997 Partitioning a vocabulary's IS-A hierarchy into trees.Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium.  630-634. 1997
1997 Supporting Infobuttons with Terminological KnowledgeProceedings / AMIA ... Annual Symposium. AMIA Symposium.  4:528-532. 1997
1997 Supporting infobuttons with terminological knowledge.Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium.  528-532. 1997
1997 Usability Testing in Medical Informatics: Cognitive Approaches to Evaluation of Information Systems and User InterfacesProceedings / AMIA ... Annual Symposium. AMIA Symposium.  4:218-222. 1997
1997 Usability testing in medical informatics: cognitive approaches to evaluation of information systems and user interfaces.Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium.  218-222. 1997
1997 Using Logical Observation Identifier Names and Codes (LOINC) to Exchange Laboratory Data among Three Academic HospitalsJournal of the American Medical Informatics Association.  4:96-100. 1997
1997 Using Logical Observation Identifier Names and Codes (LOINC) to exchange laboratory data among three academic hospitals.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  96-100. 1997
1996 An approach to coping with the annual changes in ICD9-CM. 1996
1996 Access to data: comparing AccessMed with Query by Review.Journal of the American Medical Informatics Association.  3:288-299. 1996
1996 Access to Data: Comparing AccessMed with Query by ReviewJournal of the American Medical Informatics Association.  3:288-299. 1996
1996 Cognitive evaluation of the user interface and vocabulary of an outpatient information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  22-26. 1996
1996 Collaborative medical informatics research using the Internet and the World Wide Web.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  125-129. 1996
1996 Design of a clinical event monitorJournal of Biomedical Informatics.  29:194-221. 1996
1996 Formal descriptions and adaptive mechanisms for changes in controlled medical vocabularies 1996
1996 Integrating DXplain into a clinical information system using the World Wide Web.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  348-352. 1996
1996 Just tell me what you want!: the promise and perils of rapid prototyping with the World Wide Web.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  719-723. 1996
1996 Linking patient information systems to bibliographic resources 1996
1996 Mapping medical vocabularies to the Unified Medical Language System.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  105-109. 1996
1996 Review paper: Coding systems in health care 1996
1996 Utilizing OODB schema modeling for vocabulary management.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  274-278. 1996
1995 Internet as clinical information system: Application development using the world wide webChildrens Hospital Quarterly.  7:85-97. 1995
1995 Applying a controlled medical terminology to a distributed, production clinical information system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  421-425. 1995
1995 Internet as clinical information system: Application development using the World Wide WebJournal of the American Medical Informatics Association.  2:273-284. 1995
1995 Managing vocabulary for a centralized clinical system.Medinfo. MEDINFO.  8 Pt 1:117-120. 1995
1995 Medical decision support: experience with implementing the Arden Syntax at the Columbia-Presbyterian Medical Center.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  169-173. 1995
1995 The canon group's effort: Working toward a merged modelJournal of the American Medical Informatics Association.  2:4-18. 1995
1995 The informatics superhighway: prototyping on the World Wide Web.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  111-115. 1995
1995 Vocabulary and health care information technology: State of the artJournal of the Association for Information Science and Technology.  46:777-782. 1995
1994 A general natural-language text processor for clinical radiologyJournal of the American Medical Informatics Association.  1:161-174. 1994
1994 A schema for representing medical language applied to clinical radiologyJournal of the American Medical Informatics Association.  1:233-248. 1994
1994 Controlled medical vocabulary construction: methods from the Canon Group.Journal of the American Medical Informatics Association.  1:296-297. 1994
1994 Coping with changing controlled vocabularies.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  135-139. 1994
1994 Data storage and knowledge representation for clinical workstationsInternational Journal of Medical Informatics.  34:185-194. 1994
1994 IAIMS and sharingInternational Journal of Medical Informatics.  34:339-348. 1994
1994 Knowledge-based approaches to the maintenance of a large controlled medical terminologyJournal of the American Medical Informatics Association.  1:35-50. 1994
1994 Mapping clinically useful terminology to a controlled medical vocabulary.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  211-215. 1994
1994 Patient care applications on Internet.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  1060. 1994
1994 Toward a medical-concept representation languageJournal of the American Medical Informatics Association.  1:207-217. 1994
1993 A conceptual model for clinical radiology reports.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  829-833. 1993
1993 Automatic knowledge acquisition from MEDLINE 1993
1993 From ICD9-CM to MeSH using the UMLS: a how-to guide.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  730-734. 1993
1993 Generating MEDLINE search strategies using a librarian knowledge-based system.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  596-600. 1993
1993 Interpreting natural language queries using the UMLS.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  294-298. 1993
1993 Saying what you mean and meaning what you say: Coupling biomedical terminology and knowledgeAcademic Medicine.  68:257-260. 1993
1992 As we may think: The concept space and medical hypertextJournal of Biomedical Informatics.  25:238-263. 1992
1992 The MEDLINE Button.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  81-85. 1992
1992 The integrated academic information management system at Columbia- Presbyterian Medical CenterM.D. computing : computers in medical practice.  9:35-42. 1992
1991 Adding your terms and relationships to the UMLS Metathesaurus.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  219-223. 1991
1991 Conceptual data model for a central patient database.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  381-385. 1991
1991 Representation of clinical laboratory terminology in the Unified Medical Language System.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  199-203. 1991
1991 The Columbia-Presbyterian Medical Center decision-support system as a model for implementing the Arden Syntax.Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  248-252. 1991
1990 Automated translation between medical terminologies using semantic definitionsM.D. computing : computers in medical practice.  7:104-109. 1990
1989 Nosocomial Clostridium difficile InfectionsNew England Journal of Medicine.  321:190. 1989
1989 Constrictive pericarditis after cardiac surgery: Report of three cases and review of the literatureAmerican Heart Journal.  118:1292-1301. 1989
1987 In ReplyJournal of the American Medical Association.  258:2376. 1987
1987 Prolactin Levels after PregnancyNew England Journal of Medicine.  317:384-386. 1987
1987 DXplain: An Evolving Diagnostic Decision-Support SystemJournal of the American Medical Association.  258:67-74. 1987
1986 Hematologic Data in the Case RecordsNew England Journal of Medicine.  315:1488-1489. 1986
1983 Symposium IntroductionInternational Journal of Toxicology.  2:1-4. 1983

Book

Year Title Altmetric
2021 Biomedical informatics: Computer applications in health care and biomedicine: Fifth Edition 2021
2014 Preface to the fourth edition 2014
2006 Biomedical Informatics 2006

Chapter

Year Title Altmetric
2021 Clinical research informatics.  913-940. 2021
2021 The future of informatics in biomedicine.  987-1016. 2021
2018 Chapter 31 Clinical Research Data Characteristics, Representation, Storage, and Retrieval.  547-557. 2018
2018 Clinical Research Data: Characteristics, Representation, Storage, and Retrieval.  547-557. 2018
2017 Chapter 5 Data Systems and Global Health Informatics Research.  109-128. 2017
2017 Data Systems and Global Health Informatics Research.  109-128. 2017
2014 Chapter 19 Infobuttons and Point of Care Access to Knowledge.  515-549. 2014
2014 Clinical research informatics.  755-777. 2014
2014 Infobuttons and Point of Care Access to Knowledge.  515-549. 2014
2014 Standards in biomedical informatics.  211-253. 2014
2012 Clinical Research Data: Characteristics, Representation, Storage, and Retrieval.  501-508. 2012
2012 Chapter 34 Clinical Research Data Characteristics, Representation, Storage, and Retrieval.  501-508. 2012
2012 James Ernest (Jack) cimino: Inventor of arteriovenous fistula.  125-134. 2012
2007 16 Infobuttons and point of care access to knowledge.  345-371. 2007
2007 Infobuttons and Point of Care Access to Knowledge.  345-371. 2007
2006 Standards in Biomedical Informatics.  265-311. 2006
2005 The MI-HEART Project.  227-238. 2005
2001 Standards in Medical Informatics.  212-256. 2001

Education And Training

  • Doctor of Medicine, New York Medical College 1981
  • Bachelor of Science or Mathematics in Biology / Biological Sciences, Brown University 1977
  • Full Name

  • James Cimino